Package: strawr 0.0.9

Neva Cherniavsky Durand

strawr: Fast Implementation of Reading/Dump for .hic Files

API for fast data extraction for .hic files that provides programmatic access to the matrices. It doesn't store the pointer data for all the matrices, only the one queried, and currently we are only supporting matrices (not vectors).

Authors:Neva Cherniavsky Durand [aut, cre], Muhammad Saad Shamim [aut], Aiden Lab [cph]

strawr_0.0.9.tar.gz
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manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
strawr/json (API)

# Install 'strawr' in R:
install.packages('strawr', repos = c('https://aidenlab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/aidenlab/straw/issues

Uses libs:
  • curl– Easy-to-use client-side URL transfer library
  • zlib– Compression library
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

curlzlibcpp

8.62 score 70 stars 14 packages 87 scripts 1.6k downloads 4 exports 1 dependencies

Last updated from:82fba9cf7f. Checks:8 NOTE, 5 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64NOTE114
linux-devel-x86_64NOTE110
source / vignettesOK197
linux-release-arm64NOTE115
linux-release-x86_64NOTE109
macos-release-arm64NOTE144
macos-release-x86_64NOTE225
macos-oldrel-arm64NOTE131
macos-oldrel-x86_64NOTE331
windows-develOK152
windows-releaseOK155
windows-oldrelOK141
wasm-releaseOK130

Exports:readHicBpResolutionsreadHicChromsreadHicNormTypesstraw

Dependencies:Rcpp