Package: strawr 0.0.9

Neva Cherniavsky Durand

strawr: Fast Implementation of Reading/Dump for .hic Files

API for fast data extraction for .hic files that provides programmatic access to the matrices. It doesn't store the pointer data for all the matrices, only the one queried, and currently we are only supporting matrices (not vectors).

Authors:Neva Cherniavsky Durand [aut, cre], Muhammad Saad Shamim [aut], Aiden Lab [cph]

strawr_0.0.9.tar.gz
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strawr_0.0.9.tgz(r-4.6-x86_64)strawr_0.0.9.tgz(r-4.6-arm64)strawr_0.0.9.tgz(r-4.5-x86_64)strawr_0.0.9.tgz(r-4.5-arm64)
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strawr_0.0.9.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
strawr/json (API)

# Install 'strawr' in R:
install.packages('strawr', repos = c('https://aidenlab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/aidenlab/straw/issues

Uses libs:
  • curl– Easy-to-use client-side URL transfer library
  • zlib– Compression library
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

curlzlibcpp

8.71 score 70 stars 20 packages 93 scripts 1.3k downloads 4 exports 1 dependencies

Last updated from:82fba9cf7f. Checks:8 NOTE, 7 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64NOTE124
linux-devel-x86_64NOTE85
source / vignettesOK160
linux-release-arm64NOTE117
linux-release-x86_64NOTE96
macos-release-arm64NOTE147
macos-release-x86_64NOTE306
macos-oldrel-arm64NOTE154
macos-oldrel-x86_64NOTE385
windows-devel-arm64OK392
windows-devel-x86_64OK197
windows-release-arm64OK374
windows-release-x86_64OK147
windows-oldrel-x86_64OK143
wasm-releaseOK93

Exports:readHicBpResolutionsreadHicChromsreadHicNormTypesstraw

Dependencies:Rcpp