Package: strawr 0.0.9

Neva Cherniavsky Durand

strawr: Fast Implementation of Reading/Dump for .hic Files

API for fast data extraction for .hic files that provides programmatic access to the matrices. It doesn't store the pointer data for all the matrices, only the one queried, and currently we are only supporting matrices (not vectors).

Authors:Neva Cherniavsky Durand [aut, cre], Muhammad Saad Shamim [aut], Aiden Lab [cph]

strawr_0.0.9.tar.gz
strawr_0.0.9.zip(r-4.5)strawr_0.0.9.zip(r-4.4)strawr_0.0.9.zip(r-4.3)
strawr_0.0.9.tgz(r-4.4-x86_64)strawr_0.0.9.tgz(r-4.4-arm64)strawr_0.0.9.tgz(r-4.3-x86_64)strawr_0.0.9.tgz(r-4.3-arm64)
strawr_0.0.9.tar.gz(r-4.5-noble)strawr_0.0.9.tar.gz(r-4.4-noble)
strawr.pdf |strawr.html✨
strawr/json (API)

# Install 'strawr' in R:
install.packages('strawr', repos = c('https://aidenlab.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/aidenlab/straw/issues

Uses libs:
  • curl– Easy-to-use client-side URL transfer library
  • zlib– Compression library
  • c++– GNU Standard C++ Library v3

On CRAN:

8.49 score 63 stars 11 packages 44 scripts 1.6k downloads 4 exports 1 dependencies

Last updated 8 months agofrom:3b2b117338. Checks:OK: 4 NOTE: 5. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 12 2024
R-4.5-win-x86_64OKNov 12 2024
R-4.5-linux-x86_64NOTENov 12 2024
R-4.4-win-x86_64OKNov 12 2024
R-4.4-mac-x86_64NOTENov 12 2024
R-4.4-mac-aarch64NOTENov 12 2024
R-4.3-win-x86_64OKNov 12 2024
R-4.3-mac-x86_64NOTENov 12 2024
R-4.3-mac-aarch64NOTENov 12 2024

Exports:readHicBpResolutionsreadHicChromsreadHicNormTypesstraw

Dependencies:Rcpp