Package: strawr 0.0.9

Neva Cherniavsky Durand

strawr: Fast Implementation of Reading/Dump for .hic Files

API for fast data extraction for .hic files that provides programmatic access to the matrices. It doesn't store the pointer data for all the matrices, only the one queried, and currently we are only supporting matrices (not vectors).

Authors:Neva Cherniavsky Durand [aut, cre], Muhammad Saad Shamim [aut], Aiden Lab [cph]

strawr_0.0.9.tar.gz
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strawr_0.0.9.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
strawr/json (API)

# Install 'strawr' in R:
install.packages('strawr', repos = c('https://aidenlab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/aidenlab/straw/issues

Uses libs:
  • curl– Easy-to-use client-side URL transfer library
  • zlib– Compression library
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

curlzlibcpp

8.64 score 70 stars 14 packages 75 scripts 1.9k downloads 4 exports 1 dependencies

Last updated from:82fba9cf7f. Checks:8 NOTE, 5 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64NOTE111
linux-devel-x86_64NOTE144
source / vignettesOK202
linux-release-arm64NOTE113
linux-release-x86_64NOTE118
macos-release-arm64NOTE148
macos-release-x86_64NOTE265
macos-oldrel-arm64NOTE150
macos-oldrel-x86_64NOTE308
windows-develOK175
windows-releaseOK204
windows-oldrelOK230
wasm-releaseOK102

Exports:readHicBpResolutionsreadHicChromsreadHicNormTypesstraw

Dependencies:Rcpp