Package: strawr 0.0.9

Neva Cherniavsky Durand

strawr: Fast Implementation of Reading/Dump for .hic Files

API for fast data extraction for .hic files that provides programmatic access to the matrices. It doesn't store the pointer data for all the matrices, only the one queried, and currently we are only supporting matrices (not vectors).

Authors:Neva Cherniavsky Durand [aut, cre], Muhammad Saad Shamim [aut], Aiden Lab [cph]

strawr_0.0.9.tar.gz
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strawr.pdf |strawr.html✨
strawr/json (API)

# Install 'strawr' in R:
install.packages('strawr', repos = c('https://aidenlab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/aidenlab/straw/issues

Uses libs:
  • curl– Easy-to-use client-side URL transfer library
  • zlib– Compression library
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

curlzlibcpp

8.23 score 67 stars 11 packages 49 scripts 1.5k downloads 4 exports 1 dependencies

Last updated 12 months agofrom:3b2b117338. Checks:4 OK, 8 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 12 2025
R-4.5-win-x86_64OKMar 12 2025
R-4.5-mac-x86_64NOTEMar 12 2025
R-4.5-mac-aarch64NOTEMar 12 2025
R-4.5-linux-x86_64NOTEMar 12 2025
R-4.4-win-x86_64OKMar 12 2025
R-4.4-mac-x86_64NOTEMar 12 2025
R-4.4-mac-aarch64NOTEMar 12 2025
R-4.4-linux-x86_64NOTEMar 12 2025
R-4.3-win-x86_64OKMar 12 2025
R-4.3-mac-x86_64NOTEMar 12 2025
R-4.3-mac-aarch64NOTEMar 12 2025

Exports:readHicBpResolutionsreadHicChromsreadHicNormTypesstraw

Dependencies:Rcpp